A NETWORK OF MOLECULAR AND FUNCTIONAL INTERACTIONS TO ANALYSE GEMMA OMICS DATASETS

A NETWORK OF MOLECULAR AND FUNCTIONAL INTERACTIONS TO ANALYSE GEMMA OMICS DATASETS

We developed a network of molecular and functional interactions to analyse gene-related, metabolite-related and microbiota species-related input scores derived from multi-omics datasets.

The molecular and functional interactions are derived from STRING (gene-gene interactions), STITCH (gene-metabolite), HBNet (human-bacterial gene-gene interactions) and GEMMA project datasets (metabolite-metagenomic species interactions). All features are mapped to their standard identifiers from NCBI Entrez Gene ID, NCBI PubChem CID, KEGG COMPOUND ID, ChEBI ID and metagenomic species pan-genome MSP ID.